Data, Analysis & Management: Reproducibility Resources

Reproducibility Resources – training, evaluation, open science

Penn

• Group of librarians, faculty, researchers, graduate students, undergraduate students, and others affiliated with the University of Pennsylvania who use the programming language R. They work on collaborative training projects to grow their combined skills and promote the use of reproducible research and coding practices. https://pennusergroup.wordpress.com/
• The Center for Host-Microbial Interactions (CHMI) (Penn Vet) formed as an interdisciplinary center that provides training. The transcriptomics course is for students and postdocs to analyze data generated in their laboratories. Segments in this course address transparency, reproducibility, and bioinformatics http://diytranscriptomics.com/

External

• Clearinghouse for Training Modules to Enhance Data Reproducibility (NIH) https://www.nigms.nih.gov/training/pages/clearinghouse-for-training-modules-to-enhance-data-reproducibility.aspx
• Training on Reproducibility Research Practices (Center for Open Science) https://cos.io/our-services/training-services/
• Service that evaluates the reproducibility of research (Center for Open Science) https://cos.io/our-services/research/
• Leading the Way in Replication and Open Science (Association for Psychological Science (APS)) https://www.psychologicalscience.org/uncategorized/aps-reproducibility-and-replication-initiatives.html
• Open Science Policy: Public Access Plan (NSF) https://www.nsf.gov/publications/pub_summ.jsp?ods_key=nsf15052
• Article: Reproducing Statistical Results (Annual Review of Statistics and Its Application) https://www.annualreviews.org/doi/abs/10.1146/annurev-statistics-010814-020127?casa_token=8IUHOzukWfcAAAAA%3AadBDZZ1H3D2i2_dJrmwcPbAn0VpUmP48x-ZLJ7h4WsiTD07w83lHetifpaFgTnXFSfkkH4wxWXwL
• Article: The fickle P value generates irreproducible results (Nature Methods) https://www.nature.com/articles/nmeth.3288?foxtrotcallback=true
• Article 2019: Rein in the four horsemen of irreproducibility (Nature) https://www.nature.com/articles/d41586-019-01307-2?utm_medium=email&utm_source=FYI&dm_i=1ZJN,69AFV,RFWFO2,OOENJ,1